chst11 carbohydrate (chondroitin 4) sulfotransferase 11 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: chst11provided by ZNC
Official Full Name: carbohydrate (chondroitin 4) sulfotransferase 11provided by ZNC
Primary source: ZFIN:ZDB-GENE-040315-1
See related: Ensembl:ENSDARG00000034375 AllianceGenome:ZFIN:ZDB-GENE-040315-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: C4ST1
Summary: Enables chondroitin 4-sulfotransferase activity. Acts upstream of or within chondroitin sulfate biosynthetic process; motor neuron axon guidance; and muscle organ development. Predicted to be located in Golgi membrane. Is expressed in several structures, including central nervous system; notochord; pectoral fin bud; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CHST11 (carbohydrate sulfotransferase 11). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 4

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (9103185..9173562, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (9101852..9172886, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fb79h12.x1 (e-PCR)
- UniSTS:191521

G39334 (e-PCR)
- UniSTS:25591

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chondroitin 4-sulfotransferase activity	IDA Inferred from Direct Assay more info	PubMed
enables chondroitin 4-sulfotransferase activity	IEA Inferred from Electronic Annotation more info
enables sulfotransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables sulfotransferase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carbohydrate biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within chondroitin sulfate biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within motor neuron axon guidance	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within muscle organ development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in proteoglycan biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: carbohydrate sulfotransferase 11

Names: C4ST-1; chondroitin 4-O-sulfotransferase 1; chondroitin 4-sulfotransferase 1; zC4ST-1

NP_997989.2

EC 2.8.2.5

XP_005168579.1

EC 2.8.2.5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212824.2 → NP_997989.2 carbohydrate sulfotransferase 11

See identical proteins and their annotated locations for NP_997989.2

Status: PROVISIONAL

Source sequence(s)

BC124140

UniProtKB/Swiss-Prot

Q7T3S3

UniProtKB/TrEMBL

Q08CQ4

Related

ENSDARP00000042962.4, ENSDART00000042963.6

Conserved Domains (1) summary

pfam03567
Location:113 → 343

Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007115.7 Reference GRCz11 Primary Assembly

Range

9103185..9173562 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005168522.5 → XP_005168579.1 carbohydrate sulfotransferase 11 isoform X1

UniProtKB/Swiss-Prot

Q7T3S3

UniProtKB/TrEMBL

A0A8M2BGG9

Conserved Domains (1) summary

pfam03567
Location:108 → 338

Sulfotransfer_2; Sulfotransferase family