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aamp angio-associated, migratory cell protein [ Danio rerio (zebrafish) ]

Gene ID: 405874, updated on 2-Nov-2024

Summary

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Official Symbol
aampprovided by ZNC
Official Full Name
angio-associated, migratory cell proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2370
See related
Ensembl:ENSDARG00000045019 AllianceGenome:ZFIN:ZDB-GENE-040426-2370
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:85939; zgc:92640
Summary
Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human AAMP (angio associated migratory cell protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See aamp in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (59914126..59922087)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (59981530..59990102)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 3 X-linked b Neighboring gene lysine (K)-specific demethylase 6A, like Neighboring gene G-protein coupled bile acid receptor 1 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene F-box and leucine-rich repeat protein 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The inflammatory bowel disease (IBD) susceptibility genes NOD1 and NOD2 have conserved anti-bacterial roles in zebrafish. Oehlers SH, et al. Dis Model Mech, 2011 Nov. PMID 21729873, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC85939

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
angio-associated migratory cell protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212938.1 → NP_998103.1  angio-associated migratory cell protein

    See identical proteins and their annotated locations for NP_998103.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067708
    UniProtKB/TrEMBL
    Q6NW65
    Related
    ENSDARP00000076761.4, ENSDART00000082325.6
    Conserved Domains (3) summary
    COG2319
    Location:79 → 416
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:77 → 372
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:85 → 123
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    59914126..59922087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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