poc1a POC1 centriolar protein A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: poc1aprovided by ZNC
Official Full Name: POC1 centriolar protein Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1993
See related: AllianceGenome:ZFIN:ZDB-GENE-040426-1993
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wdr51a; zgc:56055; wu:fl82d01
Summary: Predicted to be involved in cilium assembly. Predicted to act upstream of or within cell projection organization. Predicted to be active in centriole and ciliary basal body. Orthologous to human POC1A (POC1 centriolar protein A). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: 11

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (241217..309420, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (279499..282922, complement)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj84b03.y1 (e-PCR)
- UniSTS:200068

Z9192 (e-PCR)
- UniSTS:58571

fd19d04.x1 (e-PCR)
- UniSTS:204242

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell projection organization	IEA Inferred from Electronic Annotation more info
involved_in cilium assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
is_active_in centriole	IBA Inferred from Biological aspect of Ancestor more info
is_active_in ciliary basal body	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: POC1 centriolar protein homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213049.1 → NP_998214.1 POC1 centriolar protein homolog A

See identical proteins and their annotated locations for NP_998214.1

Status: PROVISIONAL

Source sequence(s)

BC045888

UniProtKB/Swiss-Prot

Q7ZVF0

Conserved Domains (3) summary

COG2319
Location:14 → 300

WD40; WD40 repeat [General function prediction only]

cd00200
Location:10 → 298

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:21 → 58

7WD40; WD40 repeat [structural motif]