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agpat3 1-acylglycerol-3-phosphate O-acyltransferase 3 [ Danio rerio (zebrafish) ]

Gene ID: 406734, updated on 17-Aug-2024

Summary

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Official Symbol
agpat3provided by ZNC
Official Full Name
1-acylglycerol-3-phosphate O-acyltransferase 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2765
See related
Ensembl:ENSDARG00000036549 AllianceGenome:ZFIN:ZDB-GENE-040426-2765
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd13g09; fj78c06; zgc:56524; wu:fa16h03; wu:fd13g09; wu:fj78c06; wu:fq33b10
Summary
Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; digestive system; optic vesicle; pronephric duct; and visual system. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (46834730..46875494, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (46146001..46184268, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884727 Neighboring gene deleted in lymphocytic leukemia 7 Neighboring gene pyridoxal (pyridoxine, vitamin B6) kinase b Neighboring gene transmembrane serine protease 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3. Hart DO, et al. Nature, 2007 Dec 13. PMID 18046332, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 1-acylglycerol-3-phosphate O-acyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables 1-acylglycerol-3-phosphate O-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
NP_998590.1
XP_005171033.1
XP_005171034.1
XP_005171035.1
XP_009292100.1
XP_009292101.1
XP_009292112.1
XP_009292116.1
XP_021325986.1
XP_021326051.1
XP_021326068.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213425.1 → NP_998590.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

    See identical proteins and their annotated locations for NP_998590.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049474
    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Related
    ENSDARP00000100307.2, ENSDART00000115081.4
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    46834730..46875494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005170977.4 → XP_005171034.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    See identical proteins and their annotated locations for XP_005171034.1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  2. XM_009293837.3 → XP_009292112.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    See identical proteins and their annotated locations for XP_009292112.1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  3. XM_009293825.3 → XP_009292100.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    See identical proteins and their annotated locations for XP_009292100.1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  4. XM_009293826.3 → XP_009292101.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    See identical proteins and their annotated locations for XP_009292101.1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  5. XM_009293841.3 → XP_009292116.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    See identical proteins and their annotated locations for XP_009292116.1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  6. XM_005170976.4 → XP_005171033.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    See identical proteins and their annotated locations for XP_005171033.1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  7. XM_021470393.1 → XP_021326068.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  8. XM_021470311.1 → XP_021325986.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  9. XM_021470376.1 → XP_021326051.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

  10. XM_005170978.4 → XP_005171035.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

    See identical proteins and their annotated locations for XP_005171035.1

    UniProtKB/TrEMBL
    B8A4Q3, F6P476, Q7ZWC9
    Conserved Domains (1) summary
    PLN02380
    Location:12 → 377
    PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase
Nucleotide Protein
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