hnrnpr heterogeneous nuclear ribonucleoprotein R [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hnrnprprovided by ZNC
Official Full Name: heterogeneous nuclear ribonucleoprotein Rprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2766
See related: Ensembl:ENSDARG00000014569 AllianceGenome:ZFIN:ZDB-GENE-040426-2766
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: hnrpr; zgc:56523; wu:fb97a09; wu:fe01h03; wu:cegs2571
Summary: Enables mRNA binding activity. Acts upstream of or within axon extension involved in axon guidance. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human HNRNPR (heterogeneous nuclear ribonucleoprotein R). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 19

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (74326..82497, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (74236..82407, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HnRNP-R-mediated axonal beta-actin mRNA translocation plays an essential physiological role for axon growth and presynaptic differentiation.
Title: The heterogeneous nuclear ribonucleoprotein-R is necessary for axonal beta-actin mRNA translocation in spinal motor neurons.

Submit: New GeneRIF Correction

General gene information

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Markers

fc25h05.x1 (e-PCR)
- UniSTS:193283

AW165121 (e-PCR)
- UniSTS:205878

G39993 (e-PCR)
- UniSTS:32320

z1271 (e-PCR), detects polymorphism
- UniSTS:205122

G47333 (e-PCR)
- UniSTS:108114

fj41b08.y1 (e-PCR)
- UniSTS:199304

z42828b (e-PCR), detects polymorphism
- UniSTS:238475

fb97a09.x1 (e-PCR)
- UniSTS:191919

fb97a09.x1 (e-PCR)
- UniSTS:191920

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables mRNA binding	IDA Inferred from Direct Assay more info	PubMed
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within axon extension involved in axon guidance	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: heterogeneous nuclear ribonucleoprotein R

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.