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si:ch211-107o10.3 si:ch211-107o10.3 [ Danio rerio (zebrafish) ]

Gene ID: 407663, updated on 17-Aug-2024

Summary

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Official Symbol
si:ch211-107o10.3provided by ZNC
Official Full Name
si:ch211-107o10.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4716
See related
Ensembl:ENSDARG00000008491 AllianceGenome:ZFIN:ZDB-GENE-030131-4716
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd55e03; wu:fd55e03
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RDH13 (retinol dehydrogenase 13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (30178253..30188866)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (29907103..29917716)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene FERM domain containing 5b Neighboring gene transmembrane p24 trafficking protein 3 Neighboring gene microRNA 184-2 Neighboring gene WD repeat domain 76

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Insight into molecular pathways of retinal metabolism, associated with vitellogenesis in zebrafish. Levi L, et al. Am J Physiol Endocrinol Metab, 2012 Mar 15. PMID 22205629
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
retinol dehydrogenase-like; uncharacterized protein LOC407663

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199300.1 → NP_001186229.1  uncharacterized protein LOC407663

    See identical proteins and their annotated locations for NP_001186229.1

    Status: VALIDATED

    Source sequence(s)
    AW019671, EH483946, EH510392
    UniProtKB/TrEMBL
    A0A8M1NXC6, F1QCW3
    Related
    ENSDARP00000012436.8, ENSDART00000002075.10
    Conserved Domains (2) summary
    PRK06197
    Location:48 → 325
    PRK06197; short chain dehydrogenase; Provisional
    cl21454
    Location:49 → 320
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    30178253..30188866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168869.4 → XP_005168926.1  retinol dehydrogenase-like isoform X1

    See identical proteins and their annotated locations for XP_005168926.1

    UniProtKB/TrEMBL
    A0A8M1NXC6, F1QCW3
    Related
    ENSDARP00000144006.1, ENSDART00000174420.2
    Conserved Domains (2) summary
    PRK06197
    Location:48 → 325
    PRK06197; short chain dehydrogenase; Provisional
    cl21454
    Location:49 → 320
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394696.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    146652..157361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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