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mrrf mitochondrial ribosome recycling factor [ Danio rerio (zebrafish) ]

Gene ID: 431721, updated on 2-Nov-2024

Summary

Official Symbol
mrrfprovided by ZNC
Official Full Name
mitochondrial ribosome recycling factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040704-12
See related
Ensembl:ENSDARG00000034174 AllianceGenome:ZFIN:ZDB-GENE-040704-12
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:91914
Summary
Predicted to enable ribosomal large subunit binding activity. Predicted to be involved in translation. Predicted to be active in mitochondrion. Is expressed in eye; immature eye; midbrain; pharyngeal arch 3-7 skeleton; and somite. Orthologous to human MRRF (mitochondrial ribosome recycling factor). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See mrrf in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (9305050..9346293, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (9471491..9512734, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene DNA ligase 1-like Neighboring gene solute carrier family 37 member 4b-like Neighboring gene RNA binding motif protein 18 Neighboring gene uncharacterized LOC110440063 Neighboring gene LIM homeobox 6a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ribosomal large subunit binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
ribosome-recycling factor, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002174.1NP_001002174.1  ribosome-recycling factor, mitochondrial

    See identical proteins and their annotated locations for NP_001002174.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074048
    UniProtKB/TrEMBL
    Q6GMJ7
    Related
    ENSDARP00000039535.4, ENSDART00000039536.5
    Conserved Domains (1) summary
    pfam01765
    Location:98255
    RRF; Ribosome recycling factor

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    9305050..9346293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394770.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    92473..133716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)