U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4323974 zinc finger BED domain-containing protein RICESLEEPER 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4323974, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4323974
Gene description
zinc finger BED domain-containing protein RICESLEEPER 4-like
Locus tag
OSNPB_010518400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1003B09; OsJ_02008
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4323974 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (18956509..18960409)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (18390219..18394270)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 Neighboring gene uncharacterized LOC112937659 Neighboring gene uncharacterized LOC4323975 Neighboring gene uncharacterized LOC136351130

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger BED domain-containing protein RICESLEEPER 4
Names
LOC_Os01g33410
Transposase-like protein RICESLEEPER 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428034.1 → NP_001414963.1  zinc finger BED domain-containing protein RICESLEEPER 4

    Status: VALIDATED

    Source sequence(s)
    AK069603, AP014957
    UniProtKB/Swiss-Prot
    A0A0P0V3C1, A2ZTS9, Q0JMB2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    18956509..18960409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JMB2.3 GenPept UniProtKB/Swiss-Prot:Q0JMB2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials