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LOC4324011 probable aspartyl aminopeptidase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324011, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4324011
Gene description
probable aspartyl aminopeptidase
Locus tag
OSNPB_010967900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1656_A11.4-1
Expression
Ubiquitous expression in leaves before flowering (RPKM 27.1), roots after flowering (RPKM 16.8) and 6 other tissues See more
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Genomic context

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See LOC4324011 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43342312..43347832)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42689865..42695448)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280163 Neighboring gene uncharacterized LOC4324010 Neighboring gene proteinaceous RNase P 2 Neighboring gene uncharacterized LOC4324013

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aminopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable aspartyl aminopeptidase
Names
Os01g0967900
putative aspartyl aminopeptidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    43342312..43347832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765821.3 → XP_015621307.1  probable aspartyl aminopeptidase isoform X1

    UniProtKB/TrEMBL
    B8A9V6, B9EWY1, Q0JFQ1, Q8SA06
    Conserved Domains (1) summary
    cd05658
    Location:67 → 513
    M18_DAP; M18 peptidase aspartyl aminopeptidase

  2. XM_066306841.1 → XP_066162938.1  probable aspartyl aminopeptidase isoform X2

    UniProtKB/TrEMBL
    B8A9V6
Nucleotide Protein
Heading Accession and Version

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