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LOC4324064 em-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324064, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324064
Gene description
em-like protein
Locus tag
OSNPB_010159600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Restricted expression toward mature seeds (RPKM 2264.2) See more
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Genomic context

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See LOC4324064 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3132440..3133393, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3124363..3125377, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase MBR1 Neighboring gene acyl-coenzyme A oxidase 4, peroxisomal Neighboring gene putative transcription factor bHLH107 Neighboring gene pyruvate decarboxylase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to abscisic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
em-like protein
Names
Os01g0159600
P0041E11.22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    3132440..3133393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773901.2 → XP_015629387.1  em-like protein

    UniProtKB/TrEMBL
    A0A0P0UYT7, B8ADE0, B9ESZ5, Q5ZEL0
    Conserved Domains (1) summary
    pfam00477
    Location:17 → 93
    LEA_5; Small hydrophilic plant seed protein
Nucleotide Protein
Heading Accession and Version

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