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LOC4324136 protein translation factor SUI1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324136, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4324136
Gene description
protein translation factor SUI1 homolog
Locus tag
OSNPB_010794500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4324136 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34257518..34261553, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33651128..33656490, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324134 Neighboring gene probable nucleoredoxin 2 Neighboring gene subtilisin-like protease SBT3.10 Neighboring gene uncharacterized LOC4325623 Neighboring gene subtilisin-like protease SBT3.5 Neighboring gene uncharacterized LOC107279871

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein translation factor SUI1 homolog
Names
Os01g0794500
P0684C02.19
putative translation initiation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    34257518..34261553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765679.3 → XP_015621165.1  protein translation factor SUI1 homolog

    UniProtKB/TrEMBL
    A0A0P0V9B3, A0A5S6R925, B8AAU0, Q0JIL0, Q5ZBT6
    Conserved Domains (1) summary
    TIGR01160
    Location:5 → 115
    SUI1_MOF2; translation initiation factor SUI1, eukaryotic

  2. XM_066309136.1 → XP_066165233.1  protein translation factor SUI1 homolog

    UniProtKB/TrEMBL
    A0A0P0V9B3, A0A5S6R925, B8AAU0, Q0JIL0, Q5ZBT6
Nucleotide Protein
Heading Accession and Version

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