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LOC4324178 uncharacterized LOC4324178 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324178, updated on 18-Aug-2023

Summary

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Gene symbol
LOC4324178
Gene description
uncharacterized LOC4324178
Locus tag
OSNPB_010655400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 22.2), leaves before flowering (RPKM 19.2) and 6 other tissues See more
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Genomic context

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See LOC4324178 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26601979..26608576, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276384 Neighboring gene histone-lysine N-methyltransferase ATX4 Neighboring gene probable plastid-lipid-associated protein 14, chloroplastic Neighboring gene uncharacterized LOC112937666

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4324178
Names
OSJNBa0049H05.21-1
OSJNBa0049H05.21-2
Os01g0655400
eukaryotic translation initiation factor 3 subunit 10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    26601979..26608576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761525.2 → XP_015617011.1  uncharacterized protein LOC4324178 isoform X1

    UniProtKB/TrEMBL
    B8A6V1, B9EYE4, Q5SN81
    Conserved Domains (1) summary
    PHA02896
    Location:288 → 511
    PHA02896; A-type inclusion like protein; Provisional

  2. XM_015761534.2 → XP_015617020.1  uncharacterized protein LOC4324178 isoform X2

    UniProtKB/TrEMBL
    B8A6V1
    Conserved Domains (3) summary
    PHA03307
    Location:430 → 667
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK07003
    Location:1078 → 1254
    PRK07003; DNA polymerase III subunit gamma/tau
    cl27929
    Location:288 → 511
    Pox_A30L_A26L; Orthopoxvirus A26L/A30L protein
Nucleotide Protein
Heading Accession and Version

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