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LOC4324201 probable protein phosphatase 2C 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324201, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324201
Gene description
probable protein phosphatase 2C 6
Locus tag
OSNPB_010583100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ABIL1; PP2C06; OsABIL1; OsPP2C06
Expression
Ubiquitous expression in roots before flowering (RPKM 40.6), leaves before flowering (RPKM 24.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (23191986..23197918)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22617729..22624096)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP57 Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 Neighboring gene UBP1-associated proteins 1C Neighboring gene uncharacterized LOC9271063

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts. Kim N, et al. Front Plant Sci, 2015. PMID 26300907, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-threonine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable protein phosphatase 2C 6
Names
ABI1-like protein 1
LOC_Os01g40094
OsABI-LIKE1
NP_001415001.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428072.1 → NP_001415001.1  probable protein phosphatase 2C 6

    Status: VALIDATED

    Source sequence(s)
    AK242616, AU174683
    UniProtKB/TrEMBL
    B8AAR7, B9EXQ9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    23191986..23197918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JLP9.1 GenPept UniProtKB/Swiss-Prot:Q0JLP9

Gene LinkOut

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Molecular Biology Databases
Research Materials