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LOC4324244 E3 ubiquitin-protein ligase At4g11680 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324244, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4324244
Gene description
E3 ubiquitin-protein ligase At4g11680
Locus tag
OSNPB_010703300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 18.7), flower buds (RPKM 5.5) and 1 other tissue See more
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Genomic context

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See LOC4324244 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29740838..29742917)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29152452..29154752)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene myb-related protein Hv33 Neighboring gene nuclear poly(A) polymerase 4 Neighboring gene farnesyl pyrophosphate synthase Neighboring gene AP-1 complex subunit mu-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
E3 ubiquitin-protein ligase At4g11680
Names
Os01g0703300
P0421H07.23-1
RING zinc finger protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    29740838..29742917
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777469.3 → XP_015632955.1  E3 ubiquitin-protein ligase At4g11680

    UniProtKB/TrEMBL
    A0A8U0WP67, A2WU72, A2ZWZ5, Q8LR65
    Conserved Domains (1) summary
    cd16474
    Location:258 → 300
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
Nucleotide Protein
Heading Accession and Version

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