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LOC4324262 E3 ubiquitin-protein ligase SIRP1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324262, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324262
Gene description
E3 ubiquitin-protein ligase SIRP1-like
Locus tag
OSNPB_010276600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 19.6), flowers (RPKM 8.6) and 4 other tissues See more
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Genomic context

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See LOC4324262 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9703396..9705143)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9690232..9692178)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene presenilin-like protein At1g08700 Neighboring gene histidine biosynthesis bifunctional protein hisIE, chloroplastic Neighboring gene pyruvate kinase, cytosolic isozyme Neighboring gene glucosidase 2 subunit beta-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase SIRP1-like
Names
Os01g0276600
P0038F12.24
zinc finger protein -like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    9703396..9705143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764268.3 → XP_015619754.1  E3 ubiquitin-protein ligase SIRP1-like

    UniProtKB/TrEMBL
    A0A0P0V122, A2WNF3, Q9SDG0
    Conserved Domains (3) summary
    COG5243
    Location:170 → 254
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    cd16454
    Location:213 → 254
    RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    pfam14369
    Location:11 → 45
    zinc_ribbon_9; zinc-ribbon
Nucleotide Protein
Heading Accession and Version

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Research Materials