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LOC4324412 transcription initiation factor TFIID subunit 15b [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324412, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4324412
Gene description
transcription initiation factor TFIID subunit 15b
Locus tag
OSNPB_010164400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 11.8), leaves after flowering (RPKM 11.2) and 6 other tissues See more
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Genomic context

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See LOC4324412 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3331439..3336984)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3322767..3328319)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene non-classical arabinogalactan protein 31 Neighboring gene non-classical arabinogalactan protein 31 Neighboring gene DEAD-box ATP-dependent RNA helicase 18-like Neighboring gene probable protein phosphatase 2C 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 15b
Names
Os01g0164400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    3331439..3336984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765410.3 → XP_015620896.1  transcription initiation factor TFIID subunit 15b

    Conserved Domains (3) summary
    smart00547
    Location:100 → 123
    ZnF_RBZ; Zinc finger domain
    COG0724
    Location:370 → 458
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12280
    Location:374 → 460
    RRM_FET; RNA recognition motif in the FET family of RNA-binding proteins

RNA

  1. XR_010740331.1 RNA Sequence

  2. XR_010740332.1 RNA Sequence

  3. XR_010740334.1 RNA Sequence

  4. XR_010740333.1 RNA Sequence

  5. XR_010740335.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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