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LOC4324568 protein NRT1/ PTR FAMILY 6.2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324568, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324568
Gene description
protein NRT1/ PTR FAMILY 6.2
Locus tag
OSNPB_010556700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1144D11.1; OJ1014_G12.27
Expression
Broad expression in flowers (RPKM 14.3), leaves before flowering (RPKM 9.8) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (21608490..21611120)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21038243..21041081)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937657 Neighboring gene calmodulin-2/4-like Neighboring gene uncharacterized LOC9271291 Neighboring gene uncharacterized LOC136351141

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligopeptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NRT1/ PTR FAMILY 6.2
Names
putative dicarboxylate transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    21608490..21611120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767068.2 → XP_015622554.1  protein NRT1/ PTR FAMILY 6.2

    UniProtKB/TrEMBL
    Q5JLL0, Q5JM16
    Conserved Domains (1) summary
    pfam00854
    Location:108 → 527
    PTR2; POT family
Nucleotide Protein
Heading Accession and Version

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