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LOC4324744 uncharacterized LOC4324744 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324744, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4324744
Gene description
uncharacterized LOC4324744
Locus tag
OSNPB_010862200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves before flowering (RPKM 98.9), roots after flowering (RPKM 38.9) and 3 other tissues See more
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Genomic context

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See LOC4324744 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37315253..37316259)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein ABHD11 Neighboring gene transfer RNA leucine (anticodon UAG) Neighboring gene sorting nexin 1 Neighboring gene uncharacterized LOC4324747 Neighboring gene rab-like protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4324744
Names
Os01g0862200
P0423B08.8-1
P0423B08.8-2
P0679C12.49-1
P0679C12.49-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    37315253..37316259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765108.2 → XP_015620594.1  uncharacterized protein LOC4324744

    UniProtKB/TrEMBL
    A0A0P0VAM4, A0A8J8YQ90, A2WX82, Q0JHI4, Q94CW5
Nucleotide Protein
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