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LOC4324848 bidirectional sugar transporter SWEET1a-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324848, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4324848
Gene description
bidirectional sugar transporter SWEET1a-like
Locus tag
OSNPB_010881300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SWEET1A; OsJ_04300; OsSWEET1a
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Genomic context

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See LOC4324848 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38884201..38887835)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38254034..38257687)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324846 Neighboring gene putative clathrin assembly protein At1g03050 Neighboring gene uncharacterized LOC4324849 Neighboring gene scarecrow-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sugar transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bidirectional sugar transporter SWEET1a
Names
B1065E10.2-1
LOC_Os01g65880
P0018C10.61-1
putative MtN3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001405445.1 → NP_001392374.1  bidirectional sugar transporter SWEET1a

    Status: VALIDATED

    Source sequence(s)
    CB650748, CB655271, CI128577, CI299491
    UniProtKB/Swiss-Prot
    A0A0P0VBD2, A3A083, Q8RZQ8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    38884201..38887835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026022384.2 → XP_025878169.1  bidirectional sugar transporter SWEET1a isoform X1

    Conserved Domains (2) summary
    pfam03083
    Location:135 → 217
    MtN3_slv; Sugar efflux transporter for intercellular exchange
    cl21610
    Location:4 → 99
    PQ-loop; PQ loop repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RZQ8.1 GenPept UniProtKB/Swiss-Prot:Q8RZQ8

Gene LinkOut

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Molecular Biology Databases
Research Materials