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LOC4324927 magnesium transporter MRS2-E-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324927, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4324927
Gene description
magnesium transporter MRS2-E-like
Locus tag
OSNPB_010869200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
MRS2-E; OsMGT1; OsJ_04219
Expression
Broad expression in leaves after flowering (RPKM 22.6), roots after flowering (RPKM 16.4) and 6 other tissues See more
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Genomic context

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See LOC4324927 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38292682..38295723)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37664035..37667277)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324926 Neighboring gene cadmium/zinc-transporting ATPase HMA3-like Neighboring gene sister chromatid cohesion protein PDS5 homolog B Neighboring gene UDP-glycosyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice. Chen ZC, et al. Plant Physiol, 2012 Aug. PMID 22732245, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in magnesium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
magnesium transporter MRS2-E
Names
LOC_Os01g64890
Mg transporter
P0677H08.30
putative magnesium transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396860.1 → NP_001383789.1  magnesium transporter MRS2-E

    Status: VALIDATED

    Source sequence(s)
    AB731703, CI246177, CI664759
    UniProtKB/Swiss-Prot
    A2WXD3, Q8S1N1
    UniProtKB/TrEMBL
    I7HHE1
    Conserved Domains (1) summary
    cd12823
    Location:28 → 416
    Mrs2_Mfm1p-like; Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    38292682..38295723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8S1N1.1 GenPept UniProtKB/Swiss-Prot:Q8S1N1

Gene LinkOut

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Molecular Biology Databases
Research Materials