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LOC4324936 probable ion channel POLLUX [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324936, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4324936
Gene description
probable ion channel POLLUX
Locus tag
OSNPB_010870100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsPOLLUX; P0039A07.9
Expression
Ubiquitous expression in leaves after flowering (RPKM 10.3), roots after flowering (RPKM 10.2) and 6 other tissues See more
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Genomic context

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See LOC4324936 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38343476..38349271, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37714875..37720660, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937602 Neighboring gene photosystem II 22 kDa protein 1, chloroplastic Neighboring gene serine/threonine-protein kinase SAPK4-like Neighboring gene uncharacterized LOC107276856 Neighboring gene DNA repair protein XRCC2 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ion channel POLLUX
Names
LOC_Os01g64980
P0039A07.9-1
P0039A07.9-2
P0677H08.41
P0677H08.41-1
P0677H08.41-2
Probable ion channel DMI1
putative DMI1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396863.1 → NP_001383792.1  probable ion channel POLLUX

    Status: VALIDATED

    Source sequence(s)
    AK067564, AK072312
    UniProtKB/Swiss-Prot
    Q0JHD3, Q5N940, Q5N941
    UniProtKB/TrEMBL
    A2WXE1, A3A006
    Conserved Domains (1) summary
    pfam06241
    Location:553 → 656
    Castor_Poll_mid; Castor and Pollux, part of voltage-gated ion channel

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    38343476..38349271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5N941.1 GenPept UniProtKB/Swiss-Prot:Q5N941

Gene LinkOut

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Research Materials