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LOC4324955 pectin acetylesterase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324955, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4324955
Gene description
pectin acetylesterase 6
Locus tag
OSNPB_010892600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4324955 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39442621..39445716, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38812118..38815223, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pectin acetylesterase 5 Neighboring gene pectin acetylesterase 5 Neighboring gene integrin-linked protein kinase 1 Neighboring gene uncharacterized LOC112937608

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectin acetylesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectin acetylesterase 6
Names
B1078G07.23
Os01g0892600
putative pectinacetylesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    39442621..39445716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306638.1 → XP_066162735.1  pectin acetylesterase 6 isoform X4

  2. XM_015766507.3 → XP_015621993.1  pectin acetylesterase 6 isoform X2

    UniProtKB/TrEMBL
    A0A0P0VBH2, B8A7E7, Q5JLW5
    Conserved Domains (1) summary
    pfam03283
    Location:30 → 375
    PAE; Pectinacetylesterase

  3. XM_066306636.1 → XP_066162733.1  pectin acetylesterase 6 isoform X3

  4. XM_066306635.1 → XP_066162732.1  pectin acetylesterase 6 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials