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LOC4324985 BTB/POZ and TAZ domain-containing protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324985, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4324985
Gene description
BTB/POZ and TAZ domain-containing protein 2
Locus tag
OSNPB_010908200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0456E05.5
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Genomic context

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See LOC4324985 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40178641..40183036)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39544211..39548602)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein terminal ear1 homolog Neighboring gene uncharacterized LOC4324984 Neighboring gene uncharacterized LOC4324987 Neighboring gene magnesium transporter MRS2-F-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BTB/POZ and TAZ domain-containing protein 2
Names
B1417F08.32
Bric-a-Brac, Tramtrack, Broad Complex BTB domain protein BTBZ2
Os01g0908200
P0497A05.15
putative BTB and TAZ domain protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001405453.1 → NP_001392382.1  BTB/POZ and TAZ domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    AU071197, CB642214, CB662556, CI758905
    UniProtKB/TrEMBL
    A3A0Q7, Q7F320, Q8L3R7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    40178641..40183036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials