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LOC4325027 fructose-bisphosphate aldolase 3, cytoplasmic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325027, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4325027
Gene description
fructose-bisphosphate aldolase 3, cytoplasmic-like
Locus tag
OSNPB_010905800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
FBA3; AldC-1; aldolase
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Genomic context

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See LOC4325027 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40067729..40070051, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39433393..39435731, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene formin-like protein 16 Neighboring gene E3 ubiquitin-protein ligase AIRP2 Neighboring gene uncharacterized LOC4324974 Neighboring gene vacuolar protein sorting-associated protein 53 A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fructose-bisphosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fructose 1,6-bisphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fructose-bisphosphate aldolase 3, cytoplasmic
Names
Aldolase C-1
B1417F08.1-1
B1417F08.1-2
Fructose-bisphosphate aldolase 3, cytoplasmic
LOC_Os01g67860
fructose-bisphosphate aldolase isoenzyme C-1
putative fructose-bisphosphate aldolase isoenzyme C-1
NP_001393114.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406185.1 → NP_001393114.1  fructose-bisphosphate aldolase 3, cytoplasmic

    Status: VALIDATED

    Source sequence(s)
    C99285, CB657388, CF277335, CI245249
    UniProtKB/Swiss-Prot
    Q42476, Q5N725
    UniProtKB/TrEMBL
    A0A1L2JKJ5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    40067729..40070051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5N725.1 GenPept UniProtKB/Swiss-Prot:Q5N725

Gene LinkOut

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Molecular Biology Databases
Research Materials