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LOC4325062 uncharacterized protein YnbD [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325062, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4325062
Gene description
uncharacterized protein YnbD
Locus tag
OSNPB_010859400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 10.6), roots before flowering (RPKM 8.9) and 6 other tissues See more
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Genomic context

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See LOC4325062 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37177416..37181122)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325060 Neighboring gene bZIP transcription factor ABI5 homolog Neighboring gene transcription factor LG2-like Neighboring gene F-box/LRR-repeat protein At1g67190

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4325062; uncharacterized protein YnbD
Names
Os01g0859400
P0489B03.12-1
P0679C12.2-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428178.1 → NP_001415107.1  uncharacterized protein YnbD

    Status: VALIDATED

    Source sequence(s)
    AK072832
    UniProtKB/TrEMBL
    B9EUT1, Q0JHJ7, Q5N7C8, Q5N938

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    37177416..37181122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026022350.1 → XP_025878135.1  uncharacterized protein LOC4325062

    Conserved Domains (1) summary
    cd14527
    Location:95 → 232
    DSP_bac; unknown subfamily of bacterial and plant dual specificity protein phosphatases
Nucleotide Protein
Heading Accession and Version

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