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LOC4325063 transcription factor LG2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325063, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4325063
Gene description
transcription factor LG2-like
Locus tag
OSNPB_010859500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LG2; rLG2; OsLG2; OsbZIP11; OsJ_04144; P0679C12.3
Expression
Ubiquitous expression in roots before flowering (RPKM 14.3), flower buds (RPKM 8.6) and 6 other tissues See more
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Genomic context

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See LOC4325063 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37808235..37815536, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37181463..37188644, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor ABI5 homolog Neighboring gene uncharacterized protein YnbD Neighboring gene F-box/LRR-repeat protein At1g67190 Neighboring gene uncharacterized LOC136355504

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor LG2
Names
LOC_Os01g64020
Os01g0859500
P0489B03.13
Protein LIGULELESS 2 homolog
Transcription factor LG2
bZIP transcription factor 11
putative basic leucine zipper protein
transcription factor HBP-1b(c38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428179.1 → NP_001415108.1  transcription factor LG2

    Status: VALIDATED

    Source sequence(s)
    AK101338, CB643022, CI270821
    UniProtKB/Swiss-Prot
    Q5N7C7
    UniProtKB/TrEMBL
    B8ACI5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    37808235..37815536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310384.1 → XP_066166481.1  transcription factor LG2 isoform X2

  2. XM_015761444.3 → XP_015616930.1  transcription factor LG2 isoform X1

    UniProtKB/TrEMBL
    B8ACI5
    Conserved Domains (2) summary
    cd14708
    Location:229 → 281
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:314 → 388
    DOG1; Seed dormancy control

  3. XM_015761450.3 → XP_015616936.1  transcription factor LG2 isoform X1

    UniProtKB/TrEMBL
    B8ACI5
    Conserved Domains (2) summary
    cd14708
    Location:229 → 281
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:314 → 388
    DOG1; Seed dormancy control
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5N7C7.1 GenPept UniProtKB/Swiss-Prot:Q5N7C7

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