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LOC4325115 putative disease resistance protein RGA1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325115, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325115
Gene description
putative disease resistance protein RGA1
Locus tag
OSNPB_010260500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 2.9), leaves before flowering (RPKM 2.2) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8763257..8767638)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8747129..8755448)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g56310 Neighboring gene kinesin-like protein KIN-14B Neighboring gene uncharacterized LOC112938360 Neighboring gene transcription factor Pur-alpha 1 Neighboring gene protein CASPARIAN STRIP INTEGRITY FACTOR 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative disease resistance protein RGA1
Names
NBS-LRR disease resistance protein -like
NBS-LRR protein
Os01g0260500
P0699D11.16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    8763257..8767638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026024453.2 → XP_025880238.1  putative disease resistance protein RGA1

    UniProtKB/TrEMBL
    A2WN34, A2ZRG7, Q9LG50
    Conserved Domains (5) summary
    sd00033
    Location:574 → 596
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:1021 → 1043
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:186 → 453
    NB-ARC; NB-ARC domain
    cl26396
    Location:2 → 111
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    cl27891
    Location:184 → 884
    LRR_3; Leucine Rich Repeat
Nucleotide Protein
Heading Accession and Version

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