U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4325258 GDSL esterase/lipase At5g45910 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325258, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4325258
Gene description
GDSL esterase/lipase At5g45910
Locus tag
OSNPB_010214800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 116.7), leaves after flowering (RPKM 26.9) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6288261..6293329)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6278450..6283587)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene signaling peptide TAXIMIN 1 Neighboring gene GDSL esterase/lipase At5g45910 Neighboring gene GDSL esterase/lipase At1g28590 Neighboring gene serine carboxypeptidase-like 50

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
GDSL esterase/lipase At5g45910
Names
OSJNBa0038J17.35-1
OSJNBa0038J17.35-2
Os01g0214800
P0515G01.13-1
P0515G01.13-2
putative esterase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    6288261..6293329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792652.3 → XP_015648138.1  GDSL esterase/lipase At5g45910

    UniProtKB/TrEMBL
    A0A0P0UZR9, A2ZQM8, B8AAJ2, Q0JPM3, Q9LHX8
    Conserved Domains (1) summary
    cd01837
    Location:30 → 360
    SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials