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LOC4325277 uncharacterized LOC4325277 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325277, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4325277
Gene description
uncharacterized LOC4325277
Locus tag
OSNPB_010679000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4325277 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28526839..28534995)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27938764..27947045)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 39 Neighboring gene uncharacterized LOC4325276 Neighboring gene aspartic proteinase NANA, chloroplast Neighboring gene UPF0678 fatty acid-binding protein-like protein At1g79260

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4325277
Names
B1144G04.33-1
B1144G04.33-2
Os01g0679000
RNA polymerase III subunit-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    28526839..28534995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306938.1 → XP_066163035.1  uncharacterized protein LOC4325277 isoform X1

    UniProtKB/TrEMBL
    B8A7K6

  2. XM_066306939.1 → XP_066163036.1  uncharacterized protein LOC4325277 isoform X3

    UniProtKB/TrEMBL
    B8A7K6

  3. XM_015779523.3 → XP_015635009.1  uncharacterized protein LOC4325277 isoform X2

    UniProtKB/TrEMBL
    A0A0P0V6L2, A0A9K3Y7R2, B8A7K6, Q0JKF1, Q5QM91
    Conserved Domains (2) summary
    pfam05645
    Location:148 → 360
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:9 → 66
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

  4. XM_015779580.3 → XP_015635066.1  uncharacterized protein LOC4325277 isoform X4

    UniProtKB/TrEMBL
    B8A7K6
    Conserved Domains (2) summary
    pfam05645
    Location:148 → 360
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:9 → 66
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

RNA

  1. XR_010738966.1 RNA Sequence

  2. XR_010738968.1 RNA Sequence

  3. XR_010738967.1 RNA Sequence

Nucleotide Protein
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