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LOC4325290 ABC transporter B family member 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325290, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4325290
Gene description
ABC transporter B family member 4
Locus tag
OSNPB_010696600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
mdr8; OJ1116_H09.11
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Genomic context

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See LOC4325290 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (29413886..29420857)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28825655..28832656)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272654 Neighboring gene two-pore potassium channel 2 Neighboring gene uncharacterized LOC9271656 Neighboring gene uncharacterized LOC107279517 Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene UDP-glycosyltransferase 88B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter B family member 4; ABC transporter B family member 9
Names
MDR-like ABC transporter
Os01g0696600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    29413886..29420857
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761603.3 → XP_015617089.1  ABC transporter B family member 9 isoform X1

    UniProtKB/TrEMBL
    A2WU37, Q7FMW3
    Conserved Domains (1) summary
    PTZ00265
    Location:8 → 1269
    PTZ00265; multidrug resistance protein (mdr1); Provisional

  2. XM_026020262.2 → XP_025876047.1  ABC transporter B family member 4 isoform X2

    UniProtKB/TrEMBL
    A2WU37
    Conserved Domains (1) summary
    cl28181
    Location:14 → 1149
    AAA; ATPases associated with a variety of cellular activities
Nucleotide Protein
Heading Accession and Version

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