U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4325354 DDT domain-containing protein DDR4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325354, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4325354
Gene description
DDT domain-containing protein DDR4
Locus tag
OSNPB_010180700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0666G04.4; OJ1174_D05.16
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4325354 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (4255915..4260277, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4245394..4249846, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein Neighboring gene DNA mismatch repair protein MSH7 Neighboring gene heat shock 70 kDa protein 15 Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain-containing protein ICU11

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RSF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DDT domain-containing protein DDR4
Names
Os01g0180700

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    4255915..4260277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772328.3 → XP_015627814.1  DDT domain-containing protein DDR4

    UniProtKB/TrEMBL
    B7F8F6, B8ADK7
    Conserved Domains (1) summary
    pfam05793
    Location:350 → 522
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials