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LOC4325484 uncharacterized serine-rich protein C215.13 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325484, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325484
Gene description
uncharacterized serine-rich protein C215.13
Locus tag
OSNPB_010141900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 9.4), leaves before flowering (RPKM 9.0) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2269262..2273962)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2261450..2266234)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene DNA damage-binding protein 2-like Neighboring gene uncharacterized LOC136353858 Neighboring gene probable zinc metalloprotease EGY2, chloroplastic Neighboring gene uncharacterized LOC4325487

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cortical microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cortical microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized serine-rich protein C215.13
Names
Os01g0141900
P0019D06.10
mucin-5AC
putative proteophosphoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    2269262..2273962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757609.3 → XP_015613095.1  uncharacterized serine-rich protein C215.13

    UniProtKB/TrEMBL
    A0A0P0UXS2, B9EZF6, Q0JQS7, Q5ZEN5
    Conserved Domains (1) summary
    PHA03247
    Location:126 → 460
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
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