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LOC4325497 protein CROWDED NUCLEI 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325497, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4325497
Gene description
protein CROWDED NUCLEI 4
Locus tag
OSNPB_010767000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NMCP1; NMCP1B; OsNMCP1; OsNMCP1b; OsJ_03582; B1143G03.1
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Genomic context

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See LOC4325497 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32932997..32937931, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32327820..32333022, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 1-like Neighboring gene probable xyloglucan glycosyltransferase 1 Neighboring gene uncharacterized LOC4325498 Neighboring gene transfer RNA threonine (anticodon AGU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice. Yang J, et al. New Phytol, 2020 Jul. PMID 32129897
  2. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
  3. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
    Title: A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleus organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear matrix constituent protein 1b
Names
LOC_Os01g56140
Nuclear matrix constituent protein 1
Nuclear matrix constituent protein 1b
OSJNBb0053G03.15
Os01g0767000
nuclear matrix constituent-like protein
putative nuclear matrix constituent protein 1 (NMCP1)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397721.1 → NP_001384650.1  nuclear matrix constituent protein 1b

    Status: VALIDATED

    Source sequence(s)
    AB110205, AU108247
    UniProtKB/Swiss-Prot
    A0A0P0V8N9, Q0JJ05, Q8LIX8
    UniProtKB/TrEMBL
    A2WVG1
    Conserved Domains (1) summary
    TIGR02168
    Location:48 → 726
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    32932997..32937931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JJ05.1 GenPept UniProtKB/Swiss-Prot:Q0JJ05

Gene LinkOut

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Molecular Biology Databases
Research Materials