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LOC4325575 alpha-amylase 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325575, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325575
Gene description
alpha-amylase 3, chloroplastic
Locus tag
OSNPB_010715400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4325575 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30357774..30366868)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29760729..29770032)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At5g56420-like Neighboring gene FBD-associated F-box protein At5g60610-like Neighboring gene mitochondrial outer membrane protein porin 4 Neighboring gene protein BZR1 homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase 3, chloroplastic
Names
B1131B07.19-1
Os01g0715400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    30357774..30366868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794134.2 → XP_015649620.1  alpha-amylase 3, chloroplastic

    UniProtKB/TrEMBL
    B8A8P2, B9EZ51
    Conserved Domains (1) summary
    PLN02784
    Location:53 → 875
    PLN02784; alpha-amylase
Nucleotide Protein
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