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LOC4325596 subtilisin-like protease SBT2.2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325596, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4325596
Gene description
subtilisin-like protease SBT2.2
Locus tag
OSNPB_010769200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0665A11.6
Expression
Broad expression in flower buds (RPKM 6.9), flowers (RPKM 4.8) and 5 other tissues See more
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Genomic context

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See LOC4325596 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33056530..33062121)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32450871..32456506)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein PAT1 homolog 1 Neighboring gene lipoyl synthase 1, chloroplastic-like Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
subtilisin-like protease SBT2.2
Names
B1143G03.30
Os01g0769200
putative meiotic serine proteinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    33056530..33062121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768640.3 → XP_015624126.1  subtilisin-like protease SBT2.2 isoform X1

    UniProtKB/TrEMBL
    A0A0N7KDT8, A2WVH4, Q0JIZ3, Q94EF5
    Conserved Domains (5) summary
    cd04852
    Location:156 → 661
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:402 → 537
    PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
    pfam05922
    Location:80 → 156
    Inhibitor_I9; Peptidase inhibitor I9
    pfam17766
    Location:748 → 841
    fn3_6; Fibronectin type-III domain
    cl10459
    Location:552 → 705
    Peptidases_S8_S53; Peptidase domain in the S8 and S53 families

  2. XM_066305238.1 → XP_066161335.1  subtilisin-like protease SBT2.2 isoform X2

    UniProtKB/TrEMBL
    A2WVH4
Nucleotide Protein
Heading Accession and Version

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