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LOC4325616 nucleobase-ascorbate transporter 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325616, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325616
Gene description
nucleobase-ascorbate transporter 2
Locus tag
OSNPB_010759900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0512C01.3
Expression
Broad expression in milk grains (RPKM 10.2), roots before flowering (RPKM 7.0) and 6 other tissues See more
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Genomic context

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See LOC4325616 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32580892..32584951)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31975839..31980079)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 12-like Neighboring gene uncharacterized LOC9270029 Neighboring gene uncharacterized LOC4325617 Neighboring gene transfer RNA tyrosine (anticodon GUA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleobase-ascorbate transporter 2
Names
Os01g0759900
P0460E08.15
putative permease 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    32580892..32584951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761412.3 → XP_015616898.1  nucleobase-ascorbate transporter 2

    UniProtKB/TrEMBL
    B8A9T1, Q7F4W3, Q94DT2
    Conserved Domains (1) summary
    cl23746
    Location:31 → 436
    Xan_ur_permease; Permease family
Nucleotide Protein
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