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LOC4325621 aspartate aminotransferase, cytoplasmic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325621, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4325621
Gene description
aspartate aminotransferase, cytoplasmic-like
Locus tag
OSNPB_010760600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in milk grains (RPKM 444.3), mature seeds (RPKM 256.4) and 6 other tissues See more
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Genomic context

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See LOC4325621 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32603775..32608349, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31998727..32003685, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene rop guanine nucleotide exchange factor 11 Neighboring gene uncharacterized LOC4325620 Neighboring gene homeobox-leucine zipper protein ROC9-like Neighboring gene probable protein ABIL5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Characterization and mapping of cDNA encoding aspartate aminotransferase in rice, Oryza sativa L. Song J, et al. DNA Res, 1996 Oct 31. PMID 9039500
  2. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-aspartate:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartate aminotransferase, cytoplasmic
Names
LOC_Os01g55540
P0460E08.21
P0512C01.10
Transaminase A
putative aspartate aminotransferase
NP_001388396.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401467.1 → NP_001388396.1  aspartate aminotransferase, cytoplasmic

    Status: VALIDATED

    Source sequence(s)
    AK103586, CI112403
    UniProtKB/Swiss-Prot
    P37833, Q5JMF4, Q7F594
    UniProtKB/TrEMBL
    A0A0P0V8J5, A0A8J8YM40, A1YQJ2, A2WVA6, A2ZY17, Q0JJ47

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    32603775..32608349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P37833.1 GenPept UniProtKB/Swiss-Prot:P37833

Gene LinkOut

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Molecular Biology Databases
Research Materials