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LOC4325729 uncharacterized LOC4325729 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325729, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325729
Gene description
uncharacterized LOC4325729
Locus tag
OSNPB_010367400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0560B06.4
Expression
Ubiquitous expression in flowers (RPKM 15.8), leaves before flowering (RPKM 13.8) and 5 other tissues See more
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Genomic context

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See LOC4325729 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15082894..15086866, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15019809..15023962, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325727 Neighboring gene uncharacterized LOC9270146 Neighboring gene probable serine/threonine-protein kinase At1g54610 Neighboring gene probable chromatin-remodeling complex ATPase chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4325729
Names
B1329D01.9-1
Os01g0367400
P0784G04.10-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    15082894..15086866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767175.3 → XP_015622661.2  uncharacterized protein LOC4325729 isoform X2

  2. XM_066305474.1 → XP_066161571.1  uncharacterized protein LOC4325729 isoform X1

Nucleotide Protein
Heading Accession and Version

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Research Materials