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LOC4325730 probable serine/threonine-protein kinase At1g54610 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325730, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4325730
Gene description
probable serine/threonine-protein kinase At1g54610
Locus tag
OSNPB_010367700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0043B10.7
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Genomic context

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See LOC4325730 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15122413..15130516)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15059427..15067553)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270146 Neighboring gene uncharacterized LOC4325729 Neighboring gene probable chromatin-remodeling complex ATPase chain Neighboring gene flavin-containing monooxygenase FMO GS-OX-like 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable serine/threonine-protein kinase At1g54610
Names
B1329D01.21
Os01g0367700
P0560B06.11
P0784G04.17
putative CRK1 protein
putative cyclin dependent kinase C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    15122413..15130516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765830.2 → XP_015621316.1  probable serine/threonine-protein kinase At1g54610 isoform X1

    UniProtKB/TrEMBL
    B8A880, Q5JJL6, Q93W00
    Conserved Domains (1) summary
    cd07840
    Location:99 → 383
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

  2. XM_015765831.2 → XP_015621317.1  probable serine/threonine-protein kinase At1g54610 isoform X2

    UniProtKB/TrEMBL
    B8A880, Q5F1W2
    Conserved Domains (1) summary
    cd07840
    Location:99 → 383
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases
Nucleotide Protein
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