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LOC4325802 uncharacterized LOC4325802 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325802, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325802
Gene description
uncharacterized LOC4325802
Locus tag
OSNPB_010133100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in mature seeds (RPKM 2.9), milk grains (RPKM 2.8) and 3 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1841219..1845348)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1833546..1837698)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 22a Neighboring gene zinc finger protein GIS3 Neighboring gene chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic-like Neighboring gene uncharacterized LOC4325803 Neighboring gene plastidic glucose transporter 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4325802
Names
Os01g0133100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    1841219..1845348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770499.3 → XP_015625985.1  uncharacterized protein LOC4325802

    UniProtKB/TrEMBL
    A2WKB7
    Conserved Domains (2) summary
    PHA03307
    Location:33 → 417
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam14309
    Location:784 → 879
    DUF4378; Domain of unknown function (DUF4378)
Nucleotide Protein
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