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LOC4325908 trihelix transcription factor ENAP2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325908, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325908
Gene description
trihelix transcription factor ENAP2
Locus tag
OSNPB_010674000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4325908 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28277863..28279241, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27690589..27692512, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene dof zinc finger protein 5-like Neighboring gene protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic Neighboring gene E3 ubiquitin ligase BIG BROTHER-related Neighboring gene probable serine/threonine-protein kinase SIS8 Neighboring gene uncharacterized LOC9272505

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trihelix transcription factor ENAP2
Names
6b-interacting protein 1-like
Os01g0674000
P0485G01.27

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    28277863..28279241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759059.3 → XP_015614545.1  trihelix transcription factor ENAP2

    UniProtKB/TrEMBL
    A2ZWG2, Q0JKH7, Q8LJG7
    Conserved Domains (1) summary
    pfam13837
    Location:16 → 100
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
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