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LOC4325976 alpha-xylosidase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325976, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4325976
Gene description
alpha-xylosidase 1
Locus tag
OSNPB_010130400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0504H10.9
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Genomic context

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See LOC4325976 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1706064..1710449)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1698198..1702818)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene metal tolerance protein 7-like Neighboring gene protein NEGATIVE REGULATOR OF RESISTANCE-like Neighboring gene uncharacterized LOC4325978 Neighboring gene uncharacterized LOC4325980

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-xylosidase 1
Names
Os01g0130400
putative alpha-glucosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    1706064..1710449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766887.3 → XP_015622373.1  alpha-xylosidase 1

    UniProtKB/TrEMBL
    A0A0N7KC97, Q0JQZ2, Q9LGC6
    Conserved Domains (3) summary
    cd06602
    Location:294 → 675
    GH31_MGAM_SI_GAA; maltase-glucoamylase, sucrase-isomaltase, lysosomal acid alpha-glucosidase
    cd14752
    Location:176 → 294
    GH31_N; N-terminal domain of glycosyl hydrolase family 31 (GH31)
    pfam16863
    Location:70 → 183
    NtCtMGAM_N; N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials