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LOC4326000 Bowman-Birk type bran trypsin inhibitor-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326000, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326000
Gene description
Bowman-Birk type bran trypsin inhibitor-like
Locus tag
OSNPB_010124100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4326000 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1351941..1353738, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1344557..1346414, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene Bowman-Birk type bran trypsin inhibitor Neighboring gene Bowman-Birk type bran trypsin inhibitor Neighboring gene Bowman-Birk type bran trypsin inhibitor Neighboring gene Bowman-Birk type bran trypsin inhibitor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Bowman-Birk type bran trypsin inhibitor-like
Names
Os01g0124100
P0037C04.15
P0445D12.39
putative Bowman Birk trypsin inhibitor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    1351941..1353738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758023.3 → XP_015613509.1  Bowman-Birk type bran trypsin inhibitor-like

    UniProtKB/TrEMBL
    A0A0P0UYB2, A2WK47, Q0JR27, Q5ZCB0, Q5ZD52
    Conserved Domains (1) summary
    smart00269
    Location:197 → 253
    BowB; Bowman-Birk type proteinase inhibitor
Nucleotide Protein
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