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LOC4326361 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326361, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326361
Gene description
protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial
Locus tag
OSNPB_010238800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 7.7), flower buds (RPKM 6.8) and 6 other tissues See more
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Genomic context

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See LOC4326361 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7688470..7690167, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7677169..7678909, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g28440 Neighboring gene probable metal-nicotianamine transporter YSL1 Neighboring gene uncharacterized LOC4326362 Neighboring gene probable transcription factor GLK2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial
Names
OSJNBa0086P08.26-1
OSJNBa0086P08.26-2
Os01g0238800
protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    7688470..7690167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760471.3 → XP_015615957.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A0P0V0T3, B8ABD4, Q0JP74, Q5NAN6

  2. XM_015760450.3 → XP_015615936.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A0P0V0P6, A0A979HK58, Q9FTU0

  3. XM_015760462.3 → XP_015615948.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X3

  4. XM_015760455.3 → XP_015615941.1  protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X3

Nucleotide Protein
Heading Accession and Version

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