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LOC4326363 probable transcription factor GLK2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326363, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4326363
Gene description
probable transcription factor GLK2
Locus tag
OSNPB_010239000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GLK2; OsGLK2
Expression
Broad expression in roots after flowering (RPKM 31.4), leaves after flowering (RPKM 30.7) and 4 other tissues See more
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Genomic context

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See LOC4326363 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7698191..7705275, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7686899..7693987, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial Neighboring gene uncharacterized LOC4326362 Neighboring gene uncharacterized LOC107281439 Neighboring gene uncharacterized LOC4326364

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable transcription factor GLK2
Names
Golden2-like protein 2
LOC_Os01g13740
OSJNBa0086P08.28-1
OSJNBa0086P08.28-2
putative transcription factor OsGLK2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397945.1 → NP_001384874.1  probable transcription factor GLK2

    Status: VALIDATED

    Source sequence(s)
    AK109503, AK121019, CI287279, CI578192
    UniProtKB/Swiss-Prot
    A0A0P0V0C1, Q5NAN4, Q5NAN5
    Conserved Domains (1) summary
    PLN03162
    Location:149 → 533
    PLN03162; golden-2 like transcription factor; Provisional

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    7698191..7705275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760427.3 → XP_015615913.1  probable transcription factor GLK2 isoform X1

    Conserved Domains (1) summary
    PLN03162
    Location:149 → 531
    PLN03162; golden-2 like transcription factor; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5NAN5.1 GenPept UniProtKB/Swiss-Prot:Q5NAN5

Gene LinkOut

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Research Materials