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CSB DNA excision repair protein CSB-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326441, updated on 16-Jul-2024

Summary

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Gene symbol
CSB
Gene description
DNA excision repair protein CSB-like
Locus tag
OSNPB_010102800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsCSB
Expression
Ubiquitous expression in leaves before flowering (RPKM 6.9), flowers (RPKM 6.4) and 6 other tissues See more
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Genomic context

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See CSB in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (155843..160870)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (151388..156511)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable inactive shikimate kinase like 1, chloroplastic Neighboring gene uncharacterized LOC4326440 Neighboring gene uncharacterized LOC112936174 Neighboring gene light-regulated protein, chloroplastic-like Neighboring gene uncharacterized LOC107279520 Neighboring gene vacuolar protein sorting-associated protein 60.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. DNA repair in higher plants; photoreactivation is the major DNA repair pathway in non-proliferating cells while excision repair (nucleotide excision repair and base excision repair) is active in proliferating cells. Kimura S, et al. Nucleic Acids Res, 2004. PMID 15150342, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription-coupled nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA excision repair protein CSB
Names
Cockayne syndrome group B
LOC_Os01g01312
Os01g0102800
P0402A09.26
P0455C04.20
P0672D08.47
cockayne syndrome protein CSB
dNA excision repair protein CSB
protein CHROMATIN REMODELING 8
putative DNA repair and recombination protein
putative RAD26
NP_001384882.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397953.1 → NP_001384882.1  DNA excision repair protein CSB

    Status: VALIDATED

    Source sequence(s)
    AB111944, CI079747, CI085087, CI616478
    UniProtKB/Swiss-Prot
    A0A0N7KC63, Q655K6, Q7F2E4
    UniProtKB/TrEMBL
    B8ACS3, B9EYR4
    Conserved Domains (2) summary
    COG0553
    Location:292 → 882
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    PTZ00108
    Location:113 → 345
    PTZ00108; DNA topoisomerase 2-like protein; Provisional

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    155843..160870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7F2E4.1 GenPept UniProtKB/Swiss-Prot:Q7F2E4

Gene LinkOut

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Molecular Biology Databases
Research Materials