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LOC4326529 chitinase CLP-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326529, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326529
Gene description
chitinase CLP-like
Locus tag
OSNPB_010937000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0504E02.6
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Genomic context

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See LOC4326529 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41784165..41785705, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41133501..41135044, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene chitinase CLP-like Neighboring gene chitinase CLP Neighboring gene chitinase CLP-like Neighboring gene chitinase CLP-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase CLP-like
Names
Os01g0937000
putative xylanase inhibitor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    41784165..41785705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787446.3 → XP_015642932.1  chitinase CLP-like

    UniProtKB/TrEMBL
    A2WYU9, Q8S1V3
    Conserved Domains (1) summary
    cd05489
    Location:51 → 406
    xylanase_inhibitor_I_like; TAXI-I inhibits degradation of xylan in the cell wall
Nucleotide Protein
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