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LOC4326549 probable pectinesterase 53 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326549, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4326549
Gene description
probable pectinesterase 53
Locus tag
OSNPB_010743200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flower buds (RPKM 2.6), milk grains (RPKM 2.0) and 2 other tissues See more
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Genomic context

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See LOC4326549 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (31655275..31658159, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (31055607..31058611, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276483 Neighboring gene protein IQ-DOMAIN 25 Neighboring gene uncharacterized LOC136351642 Neighboring gene probable glutamate carboxypeptidase LAMP1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase 53
Names
Os01g0743200
P0439E07.27-1
P0439E07.27-2
pectin methyl esterase-like
pectinesterase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    31655275..31658159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303879.1 → XP_066159976.1  probable pectinesterase 53 isoform X2

  2. XM_015780346.3 → XP_015635832.1  probable pectinesterase 53 isoform X1

    UniProtKB/TrEMBL
    A0A0P0V813, A0A0P0V854, A0A8J8YRP7, A2WUY3, Q0JJE8, Q5JKV5, Q8LQ65
    Conserved Domains (1) summary
    PLN02682
    Location:2 → 384
    PLN02682; pectinesterase family protein
Nucleotide Protein
Heading Accession and Version

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