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LOC4326893 probable indole-3-acetic acid-amido synthetase GH3.2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326893, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4326893
Gene description
probable indole-3-acetic acid-amido synthetase GH3.2
Locus tag
OSNPB_010764800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GH3.2; OsGH3-2
Expression
Broad expression in flowers (RPKM 21.8), flower buds (RPKM 19.6) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32826532..32830276)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32221363..32225033)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene isopentenyl phosphate kinase Neighboring gene uncharacterized LOC4326892 Neighboring gene uncharacterized LOC4326894 Neighboring gene uncharacterized LOC4326895

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances. Yuan Z, et al. Plant Physiol, 2021 May 27. PMID 33570603, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances.
    Title: OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid-amino acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable indole-3-acetic acid-amido synthetase GH3.2
Names
Auxin-responsive GH3-like protein 2
LOC_Os01g55940
NP_001395907.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408978.1 → NP_001395907.1  probable indole-3-acetic acid-amido synthetase GH3.2

    Status: VALIDATED

    Source sequence(s)
    AK102809, AP014957, CD670710, CI248424, CI769728
    UniProtKB/Swiss-Prot
    P0C0M2, Q0JJ19
    UniProtKB/TrEMBL
    A2WVE3, E9JFZ4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    32826532..32830276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0C0M2.1 GenPept UniProtKB/Swiss-Prot:P0C0M2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials