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LOC4326895 uncharacterized LOC4326895 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326895, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4326895
Gene description
uncharacterized LOC4326895
Locus tag
OSNPB_010765000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 9.7), roots after flowering (RPKM 5.7) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32838194..32844167, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32233083..32239038, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.2 Neighboring gene uncharacterized LOC4326894 Neighboring gene uncharacterized LOC4326897 Neighboring gene serpin-Z1-like Neighboring gene uncharacterized LOC4326899

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. STRIPE2 encodes a putative dCMP deaminase that plays an important role in chloroplast development in rice. Xu J, et al. J Genet Genomics, 2014 Oct 20. PMID 25438698
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4326895
Names
Os01g0765000
P0403C05.22-1
deoxycytidylate deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    32838194..32844167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770640.3 → XP_015626126.1  uncharacterized protein LOC4326895 isoform X1

    UniProtKB/TrEMBL
    A0A0P0V8M7, B8AA44, Q5JN09
    Conserved Domains (1) summary
    cd01286
    Location:77 → 190
    deoxycytidylate_deaminase; Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the ...

  2. XM_066308877.1 → XP_066164974.1  uncharacterized protein LOC4326895 isoform X2

    UniProtKB/TrEMBL
    A2ZY54
Nucleotide Protein
Heading Accession and Version

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